HAPLOVIEW TUTORIAL PDF

Haploview is designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses. Haploview currently supports the following functionalities:. Haploview is fully compatible with data dumps from the HapMap project and the Perlegen Genotype Browser. It can analyze thousands of SNPs tens of thousands in command line mode in thousands of individuals.

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It is strongly recommended, however, that you download and install the latest version of the JRE available for your operating system. Sun is constantly improving Java and more importantly fixing bugs that crop up. Please check the download page for more info. The following files will be used during this tutorial; If you did not use the automated installers, you will need to download them now.

Only after the software is installed and these files are available should you continue on to the next page of the tutorial. If you have problems running our software, check the documentation first, and then contact us if you still are having trouble. Skip to main content. Before taking this tour, both Java and Haploview must be installed on your computer. Haploview Please check the download page for more info.

Both of these files are excerpted from the IBD 5q31 region described by Rioux et al. Study eyes partially-lost essential genes as possible targets in cancer. Read more. Researchers pinpoint genes behind sex biases in autoimmune disorders, schizophrenia.

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Haploview -- analysis and visualization of LD and haplotype maps

It is strongly recommended, however, that you download and install the latest version of the JRE available for your operating system. Sun is constantly improving Java and more importantly fixing bugs that crop up. Please check the download page for more info. The following files will be used during this tutorial; If you did not use the automated installers, you will need to download them now.

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Chapter 1 - Using Haploview

Suppose you have already enter you own SNP data in form in the following picture details see the example file. Select the item "Convert to Haploview":. In the popup window, select your data range by clicking the navigator button:. Professional version only Use mouse to select you data range.

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